Hypocotyl Rot and Root Rot

In most

42 host plants

Last updated

Data Maturity Baseline

This profile contains verified disease data from extension databases. Regional field notes and expert review are in progress.

Conifer seedlings in nursery beds develop brown stem rot near the soil line, particularly after warm weather. Fusarium and Phytophthora cause damping-off and seedling death. Use well-drained soil, rotate beds with non-susceptible crops, avoid legume covers, and disinfect containers thoroughly. Avoid reusing old growth blocks.

Avoid poorly drained soil. Use properly conditioned seeds. Improve drainage around susceptible plants and avoid overwatering. Remove affected material and dispose of it away from the garden. When replanting, choose resistant varieties and amend the soil for better drainage if waterlogging was part of the problem.

Quick Reference

Causal Agent
In most
Host Plants
42

Management

Cultural Controls

  • Avoid poorly drained soil.
  • Use properly conditioned seeds.
  • Rotate planting beds with nonsusceptible hosts such as small grains to reduce fungal inoculum levels.
  • Avoid legume cover crops.
  • Keeping beds weed free and fallow with periodic tilling during interrotational seasons is even better.
  • Do not reuse planting containers or thoroughly wash and disinfect them if they are reused.

Host Plants (42)

Pinus albicaulis Whitebark Pine, Scrub Pine, White Pine Pinus aristata Bristlecone Pine, Rocky Mountain Bristlecone Interior Bristlecone Pinus attenuata Knobcone Pine Pinus banksiana Jack Pine, Scrub Pine, Banksian Pine, Hudson Bay Pine Pinus bungeana Lacebark Pine, Whitebark Pine, Baipi Song Pinus canariensis Canary Island Pine Pinus cembra Swiss Stone Pine Pinus contorta Lodgepole Pine Pinus contorta var. contorta Shore Pine Pinus contorta var. latifolia Rocky Mountain Lodgepole Pine Pinus coulteri Coulter Pine, Bigcone Pine Pinus densiflora Japanese Red Pine Pinus edulis Pinyon Pine, Piñón Pine, Two-needle Pinyon Colorado Pinyon Pinus elliottii Slash Pine, Swamp Pine Pinus flexilis Limber Pine, Rocky Mountain White Pine Pinus halepensis Aleppo Pine, Jerusalem Pine Pinus heldreichii Bosnian Pine, Snakeskin Pine Pinus jeffreyi Jeffrey Pine, Western Yellow Pine, Bull Pine Pinus kwangtungensis Kwangtung Pine, Guangdong Pine Pinus lambertiana Sugar Pine Pinus leucodermis Bosnian Pine Pinus monophylla Singleleaf Pinon Pine, One-leaved Pine Pinus monticola Western White Pine Pinus mugo Mugo Pine Pinus mugo var. pumilio Mugo pine, Dwarf Mugo pine Pinus nigra Austrian Pine Pinus parviflora Japanese White Pine Pinus parvifola Pinus parvifola Pinus pinaster Maritime Pine, Cluster Pine, Turpentine Pine Pinus pinea Italian Stone Pine, Umbrella Pine Pinus ponderosa Ponderosa Pine, Western Yellow Pine Pinus pumila Japanese Stone Pine, Dwarf Siberian Pine Pinus radiata Monterey Pine Pinus resinosa Red Pine Pinus sabiniana Gray Pine, Foothill Pine Pinus strobiformis Southwestern White Pine, Mexican White Pine, Chihuahua White Pine Pinus strobus Eastern White Pine Pinus sylvestris Scots Pine, Scotch Pine Pinus thunbergii Japanese Black Pine Pinus virginiana Virginia Pine, Scrub Pine, Jersey Pine Pinus wallichiana Himalayan Pine, Bhutan Pine Pinus yunnanensis Yunnan Pine